Impute2 Merger - Options and Parameters

General options

Option Description
-h, --help Show this help message and exit.
-v, --version Show program’s version number and exit.
--debug Set the logging level to debug.

Input files

Option Description
--impute2 FILE [FILE ...] | The output from IMPUTE2.


Option Description
--chr CHR The chromosome on witch the imputation was made.
--probability FLOAT The probability threshold for no calls. [<0.9]
--completion FLOAT The completion rate threshold for site exclusion. [<0.98]
--info FLOAT The measure of the observed statistical information associated with the allele frequency estimate threshold for site exclusion. [<0.00]

Output files

Option Description
--prefix FILE The prefix for the output files. [imputed]