genipe package

Module contents

Genipe is a genome-wide imputation pipeline with statistics.

genipe.test(verbosity=1)

Executes all the tests for genipe.

Parameters

verbosity (int) – the verbosity level

Just set verbosity to an integer higher than 1 to have more information about the tests.

Subpackages

• genipe.config package
  • Module contents
  • Submodules
  • genipe.config.parser module
• genipe.db package
  • Module contents
  • Submodules
  • genipe.db.utils module
• genipe.formats package
  • Module contents
  • Submodules
  • genipe.formats.impute2 module
  • genipe.formats.index module
• genipe.reporting package
  • Module contents
  • Submodules
  • genipe.reporting.autoreport module
  • genipe.reporting.utils module
• genipe.task package
  • Module contents
  • Submodules
  • genipe.task.launcher module
• genipe.tests package
  • Module contents
  • Submodules
  • genipe.tests.test_db module
  • genipe.tests.test_formats module
  • genipe.tests.test_impute2_extractor module
  • genipe.tests.test_impute2_merger module
  • genipe.tests.test_imputed_stats module
  • genipe.tests.test_launcher module
  • genipe.tests.test_main_pipeline module
  • genipe.tests.test_reporting_utils module
• genipe.tools package
  • Module contents
  • genipe.tools.impute2_extractor module
  • genipe.tools.impute2_merger module
  • genipe.tools.imputed_stats module
  • genipe.tools.genipe_tutorial

Submodules

genipe.error module

exception genipe.error.GenipeError(msg)

Bases: Exception

An Exception raised in case of a problem.

genipe.pipeline module

genipe.version module